Stem-loop gra-MIR8785

Accession

MI0027832

Description

Gossypium raimondii gra-MIR8785 precursor miRNA

Sequence

gagaaaaugaauggauguugcugcuguaaaauaaaaagauuucuggaaucuguuaaugauaagagcaucagcaucaugaauugaucaggauacgaugaauaauuuaucuccucuguaacgguauacgaugaauaauuuaguuugaugguuuuugugcaugaaaucuuuuuaUUUUACAGCAGCUACAUCCAUucaugauaag
......((((((((((((.((((((((((((((((((((((((............((((((((((((((((.....(((((((.((((((...((((((...))))))))))......((.....))..)).)))))))..))))).)))))))).))))))))))))))))))))))))))).))))))))))))......

Structure

gagaaa            u                        uggaaucuguua   -        -     cauca       a  -----------------    uac      u 
      augaauggaugu gcugcuguaaaauaaaaagauuuc            aug auaagagc aucag     ugaauug uc                 agga   gaugaa  
      |||||||||||| ||||||||||||||||||||||||            ||| |||||||| |||||     ||||||| ||                 ||||   |||||| a
      uacuUACCUACA CGACGACAUUUUauuuuucuaaag            uac uguuuuug uaguu     auuuaau ag                 uccu   cuauuu  
gaauag            U                        ------------   g        g     ---ug       a  uagcauauggcaauguc    ---      a 

Annotation confidence Not enough data

Genome context

chr3: 45620696-45620897 [+]

Mature gra-miR8785

• Accession: MIMAT0034237
• Description: Gossypium raimondii gra-miR8785 mature miRNA
• Sequence: 172 - UUUUACAGCAGCUACAUCCAU - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629