Stem-loop gra-MIR8762e

Accession

MI0027837

Description

Gossypium raimondii gra-MIR8762e precursor miRNA

Sequence

guuacuguuuUUUUUAACUUUACUGACAUGGCAUacacguggaugauccaucagcauuuaauuaauuuuuaaauuuuaaaaacuuuaaaaaaauauuuuuaaaaauuaaaaucauuaaaauuauuuaaaaauauuuuuuauaucuuuuaaauuuuaaaaauucaauuaaauguugacauguacucauccacguggcaaucaacguguaugccacaucagcaaaguuaacaaaguuaauuuu
.....((.((((.((((((((.((((..((((((((((((((((((..(((((((((((((((((((((((((.(((((((......((((((((((((((((((((...........)))).)))))))))))))))).....))))))).)))))))))).)))))))))))))..))...))))))))((........))))))))))))..)))).)))))))).)))).)).....

Structure

guuac  u    U        A    CA          ------------        -uc  --             -          u       acuuua                -    aaaa 
     ug uuUU UUAACUUU CUGA  UGGCAUacac            guggauga   ca  ucagcauuuaauu aauuuuuaaa uuuaaaa      aaaaaauauuuuuaaa aauu    u
     || |||| |||||||| ||||  ||||||||||            ||||||||   ||  ||||||||||||| |||||||||| |||||||      |||||||||||||||| ||||    c
     au gaaa aauugaaa gacu  accguaugug            caccuacu   gu  aguuguaaauuaa uuaaaaauuu aaauuuu      uuuuuuauaaaaauuu uuaa    a
uuuua  u    c        c    ac          caacuaacggug        cau  ac             c          u       -cuaua                a    aauu 

Annotation confidence Not enough data

Genome context

chr8: 43422860-43423100 [-]

Mature gra-miR8762e

• Accession: MIMAT0034242
• Description: Gossypium raimondii gra-miR8762e mature miRNA
• Sequence: 11 - UUUUUAACUUUACUGACAUGGCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629