Stem-loop gra-MIR8762c

Accession

MI0027838

Description

Gossypium raimondii gra-MIR8762c precursor miRNA

Gene family

MIPF0001859; MIR8762

Sequence

ggacggaaaaUUAACGUUUGUUAACUUUGUUGAUuuaauacaugaauugucucauagaugccacaucaauaauuaauuuuuuuaauuaaaaaauuaaaaauuuauuuaaaaaaauuguuaaaauuguuaaaaaguauaaaauuauaaaaaaauauuuuuaauuuuuuuaaaauuaauuaauuacuaacgugauaauccacauauaugucaccuuaacaaaguuaagaaacguuaacuuuuuuuaucua
(((.(((((((((((((((.(((((((((((((........((((......)))).((((...))))((((((((((((((((((.((((..........)))).)))))))))))).....))))))....((((...((((((((((((((.......)))))))))....)))))...))))...((((((...........)))))).))))))))))))).)))))))))..)))))).))).

Structure

-   c      --         G             Uuuaauacaugaauugucucauagaugccacaucaauaauuaauuuuuuuaauuaaaaaauuaaaaauuuauuuaaaaaaauuguuaaaauuguuaaaa    uaa     ----         au 
 gga ggaaaa  UUAACGUUU UUAACUUUGUUGA                                                                                                   agua   aauua    uaaaaaaau  u
 ||| ||||||  ||||||||| |||||||||||||                                                                                                   ||||   |||||    |||||||||  u
 ucu uuuuuu  aauugcaaa aauugaaacaauu                                                                                                   ucau   uuaau    auuuuuuua  u
a   a      uc         g             ------------------------------------------------------------------------ccacuguauauacaccuaauagugcaa    uaa     uaaa         au 

Annotation confidence Not enough data

Genome context

chr2: 21452515-21452762 [-]

Mature gra-miR8762c

• Accession: MIMAT0034243
• Description: Gossypium raimondii gra-miR8762c mature miRNA
• Sequence: 11 - UUAACGUUUGUUAACUUUGUUGAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629