Stem-loop gra-MIR8670a

Accession

MI0027839

Description

Gossypium raimondii gra-MIR8670a precursor miRNA

Gene family

MIPF0002041; MIR8670

Sequence

caccgaagcuAAAGUUGGGCCCCUGUUGGUGCGGgagcgucgguaaaaaaguguccccauuucagacaucaacuguuuuaucccgacacuuuuuuuacccgacgcucccgcaccaacaggggcccaacuuuagcuucggugc
(((((((((((((((((((((((((((((((((((((((((((.(((((((((((........(((((.....)))))......)))))))))))...))))))))))))))))))))))))))))))))))))))))))).

Structure

-                                           --u           cccauuuc     u 
 caccgaagcuAAAGUUGGGCCCCUGUUGGUGCGGgagcgucgg   aaaaaaguguc        agaca c
 |||||||||||||||||||||||||||||||||||||||||||   |||||||||||        ||||| a
 guggcuucgauuucaacccggggacaaccacgcccucgcagcc   uuuuuucacag        uuugu a
c                                           cau           --cccuau     c 

Annotation confidence Not enough data

Genome context

chr10: 9698287-9698428 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8670a

Mature gra-miR8670a

• Accession: MIMAT0034244
• Description: Gossypium raimondii gra-miR8670a mature miRNA
• Sequence: 11 - AAAGUUGGGCCCCUGUUGGUGCGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629