Stem-loop gra-MIR8670b

Accession

MI0027840

Description

Gossypium raimondii gra-MIR8670b precursor miRNA

Gene family

MIPF0002041; MIR8670

Sequence

caccgaagcuAAAGUUGGGCCCCUGUUGGUGCGGgagcgucggguaaaaaaagugucgggauaaaacaguugaugucugaaauggggacacuuuuuuaccgacgcucccgcaccaacaggggcccaacuuuagcuucggugc
(((((((((((((((((((((((((((((((((((((((((((...(((((((((((.........(((.......))).......))))))))))).))))))))))))))))))))))))))))))))))))))))))).

Structure

-                                           gua           gggauaaaa   uu 
 caccgaagcuAAAGUUGGGCCCCUGUUGGUGCGGgagcgucgg   aaaaaaguguc         cag  g
 |||||||||||||||||||||||||||||||||||||||||||   |||||||||||         |||  a
 guggcuucgauuucaacccggggacaaccacgcccucgcagcc   uuuuuucacag         guc  u
c                                           --a           --ggguaaa   ug 

Annotation confidence Not enough data

Genome context

chr10: 9698288-9698429 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8670b

Mature gra-miR8670b

• Accession: MIMAT0034245
• Description: Gossypium raimondii gra-miR8670b mature miRNA
• Sequence: 11 - AAAGUUGGGCCCCUGUUGGUGCGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629