Stem-loop gra-MIR8723a

Accession

MI0027845

Description

Gossypium raimondii gra-MIR8723a precursor miRNA

Gene family

MIPF0001878; MIR8723

Sequence

ccguuaaacgUGUAACAGUAAGCUGACGUGACAauuuaaauuaucauuucaaacaaaaaauuuagguuaaauuauauaauugguccccauauuuuuucuuuuugagcaauuuauuuuuucuuuuauguucuuuuaacuuuccuuuauuuuuucuuuaucuuccauuccauuauuuucuacuucucucccucuauuuuccucucuucuccaucuauuuuaacguaaaaguaaaaaauuaaauuacucaaaacgaaaaaaaaauauaggaaccaauuguauaauuuaaccuaaaauuuuuacuugaaaugaugauuuaacacgccacaucagcuuacuguuacaccguuaacag
..(((((..(((((((((((((((((.(((.(...(((((((((((((((((..(((((.((((((((((((((((((((((((.((.((((((((((.(((((((.((((((((((((((((((((((.........................................................................................)))))))))).)))))).)))))).))))))).))...)))))))).)).)))))))))))))))))))))))).)))))..)))))))))))))))))...).))).)))))))))))))))))..)))))..

Structure

cc     ac                 C   A Aau                 ac     a                        c  c        ---  u       c      -      -          cuuuuaacuuuccuuuauuuuuucuuuaucuuccauuccauua 
  guuaa  gUGUAACAGUAAGCUGA GUG C   uuaaauuaucauuucaa  aaaaa uuuagguuaaauuauauaauuggu cc auauuuuu   uc uuuugag aauuua uuuuuu cuuuuauguu                                           u
  |||||  ||||||||||||||||| ||| |   |||||||||||||||||  ||||| |||||||||||||||||||||||| || ||||||||   || ||||||| |||||| |||||| ||||||||||                                           u
  caauu  cacauugucauucgacu cac g   aauuuaguaguaaaguu  uuuuu aaauccaauuuaauauguuaacca gg uauaaaaa   ag aaaacuc uuaaau aaaaaa gaaaaugcaa                                           u
ga     gc                 a   c cac                 ca     a                        a  a        aaa  c       a      u      u          uuuuaucuaccucuucucuccuuuuaucucccucucuucaucu 

Annotation confidence Not enough data

Genome context

chr13: 4595934-4596285 [-]

Mature gra-miR8723a

• Accession: MIMAT0034250
• Description: Gossypium raimondii gra-miR8723a mature miRNA
• Sequence: 11 - UGUAACAGUAAGCUGACGUGACA - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629