Stem-loop gra-MIR7492o

Accession

MI0027846

Description

Gossypium raimondii gra-MIR7492o precursor miRNA

Gene family

MIPF0001661; MIR7492

Sequence

aaaaacgccgCUAAAGAUCUGAGCAUUAGUGGCGcuuucucaaaaaaugccgcaaaagaucugagcauuagcggcgcuuuuuuuaaaaacgccgcuaaagaucugaaagguacaaaacgaugucguuggacuuagacuuuuugcggcguuuuuucgaaaaacgccgcuaaugcuaauuuuuagcggcgcuuuccuagaaacaccgcuaacgcucgaucuuuagcggcguuuuacguaaaacgccgcuauugcucgauuuuuaguggcguuuuuu
(((((((((((((((((((.(((((.((((((((.(((..(..((((((((((.(((((((..(((((((((((((.(((((..(((((((((((.((((.((((...(((....((((....))))..)))))))))))..)))))))))))..))))).))))))))))))).....(((((((.(.((((...))))).))))))).....))))))).))))))))))..)..))))))))))).)))))))))))))))))))))))).

Structure

-                   U     U        c   cu aa          a       --------------------------------------ug             c     uu           -u    a    aaa   acaa    a 
 aaaaacgccgCUAAAGAUC GAGCA UAGUGGCG uuu  c  aaaaugccgc aaagauc                                        agcauuagcggcg uuuuu  aaaaacgccgc  aaag ucug   ggu    aacg u
 ||||||||||||||||||| ||||| |||||||| |||  |  |||||||||| |||||||                                        ||||||||||||| |||||  |||||||||||  |||| ||||   |||    ||||  
 uuuuugcggugauuuuuag cucgu aucgccgc aaa  g  uuuugcggcg uuucuag                                        ucguaaucgccgc aaaag  uuuuugcggcg  uuuc agau   uca    uugc g
u                   -     u        -   au ca          a       cucgcaaucgccacaaagauccuuucgcggcgauuuuuaa             a     cu           uu    -    ---   --gg    u 

Annotation confidence Not enough data

Genome context

chr3: 36809913-36810186 [+]

Mature gra-miR7492o

• Accession: MIMAT0034251
• Description: Gossypium raimondii gra-miR7492o mature miRNA
• Sequence: 11 - CUAAAGAUCUGAGCAUUAGUGGCG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629