Stem-loop gra-MIR7493b

Accession

MI0027851

Description

Gossypium raimondii gra-MIR7493b precursor miRNA

Gene family

MIPF0001865; MIR7493

Sequence

uauuuuuuuguacgauuaacauuuuaaugauucaaccgccauauuuuacauuccauccauauagaucaugcauguaaaacuuuaaauauuuuuuuaauuauuuauuuuauguaaaaaacuauuaauuguuuaauaaauauuaauauacucuuuuuaauauugaaaugauaaagauaucaaaucgguccaaaaauugcaugggugacaaguacaauuauauugaaaaauucagcgaUUGGAUUGUUAAAAGGUUAAUUGUaaaaaaaaau
.((((((((.((((((((((.((((((((((((((.(((...(((((.((...............((((.((((((((((..(.((((.(((((((..((.......))..))))))).)))).)..))))....((((((((..........))))))))((..(((((....)))))..))...........)))))).))))...............)).)))))...))).)))))))))))))).)))))))))).))))))))

Structure

u        g          a              c   cau     a  uuccauccauauaga    g      ---------------------------------------------------------------    uu a    u       au  uu 
 auuuuuuu uacgauuaac uuuuaaugauucaa cgc   auuuu ca               ucau caugua                                                               aaac  u aaua uuuuuua  ua  u
 |||||||| |||||||||| |||||||||||||| |||   ||||| ||               |||| ||||||                                                               ||||  | |||| |||||||  ||  a
 uaaaaaaa aUGUUAAUUG AAAAUUGUUAGGUU gcg   uaaaa gu               agug guacgu                                                               uuug  a uuau aaaaaau  au  u
-        a          G              a   acu     a  uauauuaacaugaac    g      uaaaaaccuggcuaaacuauagaaauaguaaaguuauaauuuuucucauauaauuauaaauaa    uu a    c       gu  uu 

Annotation confidence Not enough data

Genome context

chr4: 60486648-60486916 [-]

Mature gra-miR7493b

• Accession: MIMAT0034256
• Description: Gossypium raimondii gra-miR7493b mature miRNA
• Sequence: 236 - UUGGAUUGUUAAAAGGUUAAUUGU - 259
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629