miRBase entry: gra-MIR8739

Stem-loop gra-MIR8739


Accession
MI0027852
Description
Gossypium raimondii gra-MIR8739 precursor miRNA


Sequence

guauacauggcaugcuauguguaacuguuuuguuauuuuaucagucacaccaaauuuuaauauuagaaauggaugggacuuuuaauagaaauaaccaguuuacucuuuaauccaauguauagagacuaauuuauuuauuuuuugaguaaacgagguaaaaugaaauuuggcuccuaauacaaggacuuccaugcaugcuuuuuuuuuuuuuuuaccuucaauaaugacaauuuaauauuccuuaagaaaaguuugguaaaaauaucaugaaggucuuugcaauagaugucaaauugcauuuugccccuucuacuaaaaaaugaguaaauuugucccuguacauuagauuaaauaguaaaauggucuuuuauguuaaaaguuucauccaauucuacuauuaaaaauuggcauggcuguuagaaUAACUAAAUAGUGACACGUGGCAUggcaugugua
.((((((((.((((((((((((.(((((((.(((((((((.((((((..((((.((((((((.(((((.((((((((((((((((((.(((..((((.((((((.(((((((.(((((((((.(((.((((((((((((((((.((((...(.(((((((((.((((((((..(((...(((((((((.((((.(((...........((((((((......................................))))))))))))))).)))))))))...)))..)))))))).))))))))).)...)))))))))))))))))))).))).))))))))).))))))).)))))).))))..))).)))))))))))))))))).))))).)))))))).))))..)))))).))))))))).))))))).)))))))))))).))))))))

Structure
g        g            a       u         u      ca    a        u     a                  g   ua    g      c       c         a   u                g    aac a         a        uc   aua         c    c   cuuuuuuuuuu        uucaauaaugacaauuua 
 uauacaug caugcuaugugu acuguuu guuauuuua caguca  ccaa uuuuaaua uagaa uggaugggacuuuuaaua aaa  acca uuuacu uuuaauc aauguauag gac aauuuauuuauuuuuu agua   g gguaaaaug aauuuggc  cua   caaggacuu caug aug           uuuuuacc                  a
 |||||||| |||||||||||| ||||||| ||||||||| ||||||  |||| |||||||| ||||| |||||||||||||||||| |||  |||| |||||| ||||||| ||||||||| ||| |||||||||||||||| ||||   | ||||||||| ||||||||  |||   ||||||||| |||| |||           ||||||||                   
 auguguac gUACGGUGCACA UGAUAAA CAAUaagau gucggu  gguu aaaauuau aucuu accuacuuugaaaauugu uuu  uggu aaauga aaauuag uuacauguc cug uuaaaugaguaaaaaa ucau   c ccguuuuac uuaaacug  gau   guuucugga guac uau           aaaaaugg                  u
-        g            G       U         u      ac    a        c     a                  a   uc    a      u       a         c   u                -    cuu c         g        ua   aac         a    -   -----------        uuugaaaagaauuccuua 


Annotation confidence Not enough data
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Genome context
chr4: 61702568-61703023 [-]

Database links

Mature gra-miR8739

Accession MIMAT0034257
Description Gossypium raimondii gra-miR8739 mature miRNA
Sequence 423 - UAACUAAAUAGUGACACGUGGCAU - 446
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629