Stem-loop gra-MIR7484n

Accession

MI0027853

Description

Gossypium raimondii gra-MIR7484n precursor miRNA

Gene family

MIPF0001667; MIR7484

Sequence

uaguccucuacauuagaucaaagacuaaauuggucauaucuguaaaaaauuucauccaauuguacuguuaaaaacuuguguggcuaacagaaauaaccaauuagugacauauggcuugccacauguaccuuaaaaauaaaugaaauuuuaagcaaaaggaccacuggaCUAGUUUGCUCUUUGAUCUAAUGUacaaggauca
..(((((.((((((((((((((((.((((((((((.....(((..((((((((((......(((((((..((..(.(((((.(((((..(.......)..))))).))))).)..))...))).))))...........))))))))))..)))..((.....)).)))))))))).))))))))))))))))..)))))..

Structure

ua     -c                c          -------auauc   aa          -----ccaauu    -   -ua  aa u     g     ca aa 
  guccu  uacauuagaucaaaga uaaauugguc            ugu  aaaauuucau           guac ugu   aa  c ugugu gcuaa  g  a
  |||||  |||||||||||||||| ||||||||||            |||  ||||||||||           |||| |||   ||  | ||||| |||||  |  u
  uagga  aUGUAAUCUAGUUUCU GUUUGAUCag            acg  uuuuaaagua           caug aca   uu  g auaca ugauu  c  a
ac     ac                C          gucaccaggaaa   aa          aauaaaaauuc    u   ccg  cg u     g     aa ca 

Annotation confidence Not enough data

Genome context

chr6: 49675651-49675852 [+]

Mature gra-miR7484n

• Accession: MIMAT0034258
• Description: Gossypium raimondii gra-miR7484n mature miRNA
• Sequence: 169 - CUAGUUUGCUCUUUGAUCUAAUGU - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629