miRBase entry: gra-MIR8639e

Stem-loop gra-MIR8639e


Accession
MI0027859
Description
Gossypium raimondii gra-MIR8639e precursor miRNA
Gene family
MIPF0001883; MIR8639


Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaacucuuuuaagcuuucaauauauacuaaccagauuuuaguaaugaaacugacuuuuauauuuaacauuugaaaaauauaaaaaaaaauuagacaaaaacaacuuucauauuugucacuuaaaagaauuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.((((((((((((((((((((((((((((((((((((((.(((((((((..................(((.(((((....))))))))..((((((((((..........))))))))))........((((((.............)))))).))))))))).))))))))))))))))))))))))))))))))))))))

Structure
g                                      c         cuuucaauauauacuaaccagauuuuaguaaugaaacugac          aaca 
 uaauggaagacuuguuuaauucuacuuauguuuaacaa ucuuuuaag                                         uuuuauauuu    u
 |||||||||||||||||||||||||||||||||||||| |||||||||                                         ||||||||||     
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguu agaaaauuc                                         aaaauauaaa    u
-                                      a         -------acuguuuauacuuucaacaaaaacagauuaaaaa          aagu 


Annotation confidence Not enough data
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Genome context
chr13: 11302131-11302332 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR8639e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8639e

Accession MIMAT0034264
Description Gossypium raimondii gra-miR8639e mature miRNA
Sequence 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629