Stem-loop pin-MIR8788

Accession

MI0027863

Description

Phytophthora infestans pin-MIR8788 precursor miRNA

Gene family

MIPF0001903; MIR8788

Sequence

gcgagagcucgccucgcCUACCAAGCGUACCAGCGCCGcauuucagcacacgagcgcucucuggcuuaaugguuagcuugcacucguuugcugaguugcaGCGCUGGUUCGCUUGGUACGCuaggugcacucuggc
((.((((..(((((.((.(((((((((.((((((((.(((.(((((((.(((((.((...((((((....))))))...)).))))).))))))).))).)))))))).))))))))).)).)))))..)))).))

Structure

  g    cu     c  C         U        C   u       c     c  ucu      u 
gc agag  cgccu gc UACCAAGCG ACCAGCGC Gca uucagca acgag gc   cuggcu a
|| ||||  ||||| || ||||||||| |||||||| ||| ||||||| ||||| ||   ||||||  
cg ucuc  gugga CG AUGGUUCGC UGGUCGCG cgu gagucgu ugcuc cg   gauugg a
  g    ac     u  C         U        a   u       u     a  uuc      u 

Annotation confidence Not enough data

Genome context

Unknown

Mature pin-miR8788-5p

• Accession: MIMAT0034268
• Description: Phytophthora infestans pin-miR8788-5p mature miRNA
• Sequence: 18 - CUACCAAGCGUACCAGCGCCG - 38
• Evidence: experimental ; Illumina [1]

Mature pin-miR8788-3p

• Accession: MIMAT0034269
• Description: Phytophthora infestans pin-miR8788-3p mature miRNA
• Sequence: 101 - GCGCUGGUUCGCUUGGUACGC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24204767
   Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs
   Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC
   PLoS One (2013) 8:e77181