Stem-loop psj-MIR8788a

Accession

MI0027864

Description

Phytophthora sojae psj-MIR8788a precursor miRNA

Gene family

MIPF0001903; MIR8788

Sequence

gcgagaguucgcguagcCUACCAAGCGUACCAAUACCGuaauucagcacacgagugcgugaggguggcgagccccccccgcgcgcucguuugcugagaugcaGUGUUGGUUCGCUUGGUACGCcccgugcacucuugc
((((((((.((((..((.(((((((((.((((((((.(((.(((((((.(((((((((((.(((.((....)).))).))))))))))).))))))).))).)))))))).))))))))).))..)))).))))))))

Structure

        u    ua  C         U        C   a       c           a   u  c 
gcgagagu cgcg  gc UACCAAGCG ACCAAUAC Gua uucagca acgagugcgug ggg gg g
|||||||| ||||  || ||||||||| |||||||| ||| ||||||| ||||||||||| ||| ||  
cguucuca gugc  CG AUGGUUCGC UGGUUGUG cgu gagucgu ugcucgcgcgc ccc cc a
        c    cc  C         U        a   a       u           c   c  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature psj-miR8788a-5p

• Accession: MIMAT0034270
• Description: Phytophthora sojae psj-miR8788a-5p mature miRNA
• Sequence: 18 - CUACCAAGCGUACCAAUACCG - 38
• Evidence: experimental ; 454 [1]

Mature psj-miR8788a-3p

• Accession: MIMAT0034271
• Description: Phytophthora sojae psj-miR8788a-3p mature miRNA
• Sequence: 103 - GUGUUGGUUCGCUUGGUACGC - 123
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 24204767
   Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs
   Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC
   PLoS One (2013) 8:e77181