miRBase entry: pra-MIR8788b

Stem-loop pra-MIR8788b


Accession
MI0027867
Description
Phytophthora ramorum pra-MIR8788b precursor miRNA
Gene family
MIPF0001903; MIR8788


Sequence

gcgagaguucgcuucgcCUACCAAGCGUACCAACGCCGcauuguagcaaacgaggaguccaagguggcgcagccucucgggccucucauuugcugcgcugcaGCGCUGGUUCGCUUGGUACGCcgagcgcacucuugc
((((((((.(((((.((.(((((((((.((((.(((.(((.(((((((((.((((.((((.(((.(((...)))))).)))).)))).))))))))).))).))).)))).))))))))).)).))))).))))))))

Structure
        u     c  C         U    A   C   u         c    a    a   u   g 
gcgagagu cgcuu gc UACCAAGCG ACCA CGC Gca uguagcaaa gagg gucc agg ggc  
|||||||| ||||| || ||||||||| |||| ||| ||| ||||||||| |||| |||| ||| ||| c
cguucuca gcgag CG AUGGUUCGC UGGU GCG cgu gcgucguuu cucu cggg ucu ccg  
        c     c  C         U    C   a   c         a    c    c   -   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pra-miR8788b-5p

Accession MIMAT0034276
Description Phytophthora ramorum pra-miR8788b-5p mature miRNA
Sequence 18 - CUACCAAGCGUACCAACGCCG - 38
Evidence experimental
454 [1]

Mature pra-miR8788b-3p

Accession MIMAT0034277
Description Phytophthora ramorum pra-miR8788b-3p mature miRNA
Sequence 103 - GCGCUGGUUCGCUUGGUACGC - 123
Evidence experimental
454 [1]

References

  1. PubMed ID: 24204767
    Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs
    Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC
    PLoS One (2013) 8:e77181