miRBase entry: cfa-mir-8830-1

Stem-loop cfa-mir-8830-1

Accession

MI0027914

Description

Canis familiaris cfa-mir-8830-1 precursor miRNA

Gene family

MIPF0001924; mir-8830

Sequence

caggaccggcuucccUCGUCGCUGAGGCAGGACCGACUUCccucauggccgaggcaggaccggcuuugcucauggccgaggcaggaccggcuucg
..((((((((((.((((((((.((((..(((.(((.(((.((((......)))).)))..))))))..))))))).))))).))).)))).))).

Structure

ca   -    -   c     -   C    GC   A   -A   C    au 
  gga ccgg cuu ccUCG UCG UGAG  AGG CCG  CUU ccuc  g
  ||| |||| ||| ||||| ||| ||||  ||| |||  ||| ||||   
  cuu ggcc gga ggagc ggu acuc  uuc ggc  gga ggag  g
-g   c    a   c     c   -    gu   -   ca   c    cc

Annotation confidence Not enough data

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Genome context

chr11: 14017421-14017515 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-8830-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-8830

Accession	MIMAT0034323
Description	Canis familiaris cfa-miR-8830 mature miRNA
Sequence	16 - UCGUCGCUGAGGCAGGACCGACUUC - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545