miRBase entry: cfa-mir-8793-3

Stem-loop cfa-mir-8793-3


Accession
MI0027939
Description
Canis familiaris cfa-mir-8793-3 precursor miRNA
Gene family
MIPF0001962; mir-8793


Sequence

ccagcucgaucaccucuggcUCUGAAGCUUUAGCAGGCCCCGAGGuaggagcuggggccgguuguugaggugguucaggauauugcacaggggcagacacuaguu
............(((((((((((((((((((((((((((((.((.......))))))))...)))))))))..)))))).....)).))))))............

Structure
ccagcucgauca      -  -----      --         ---      G  Gu 
            ccucug gc     UCUGAA  GCUUUAGCA   GGCCCC AG  a
            |||||| ||     ||||||  |||||||||   |||||| ||  g
            ggggac cg     ggacuu  uggaguugu   ccgggg uc  g
uugaucacagac      a  uuaua      gg         ugg      -  ga 


Annotation confidence Not enough data
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Genome context
chr16: 13946165-13946269 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-8793-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8793

Accession MIMAT0034283
Description Canis familiaris cfa-miR-8793 mature miRNA
Sequence 21 - UCUGAAGCUUUAGCAGGCCCCGAGG - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545