miRBase entry: cfa-mir-8799e-1

Stem-loop cfa-mir-8799e-1


Accession
MI0027967
Description
Canis familiaris cfa-mir-8799e-1 precursor miRNA
Gene family
MIPF0001881; mir-8799


Sequence

ccuggccucugccugucccggggggaaaucggauccugggcuguguccgccggcgcccugggcuccuaggccugCGCUGUUGGAAUCGCGCUCCUGGCcgugcagcccccuccguggagccacgcccgagccc
...(((.((.((.((((((((((((....(((..((.((((.(((((((.((((((...(((((....))))))))))).))))..))))).)).))))).......))))))).)))..)).))..))))).

Structure
ccu   c  -u  c  --   -       ---aaau   au  u  -  u   --    c      ccu     c 
   ggc uc  gc ug  ucc cgggggg       cgg  cc gg gc gug  uccg cggcgc   gggcu c
   ||| ||  || ||  ||| |||||||       |||  || || || |||  |||| ||||||   |||||  
   ccg ag  cg ac  agg gccuccc       gcC  GG CC CG CGC  AGGU GUCGCg   uccgg u
--c   -  cc  c  cg   u       ccgacgu   --  U  U  -   UA    U      ---     a 


Annotation confidence Not enough data
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Genome context
chr6: 41017022-41017154 [+]

Database links

Mature cfa-miR-8799e

Accession MIMAT0034371
Description Canis familiaris cfa-miR-8799e mature miRNA
Sequence 75 - CGCUGUUGGAAUCGCGCUCCUGGC - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545