miRBase entry: cfa-mir-1185

Stem-loop cfa-mir-1185


Accession
MI0027980
Description
Canis familiaris cfa-mir-1185 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

gguccucacuggagcugcucuuugguacuugaagagaggauacccuuuguauguucacuuuauuaauggcgaAUAUACAGGGGGAGACUCUUAUuugcguaucaaacucugaccgggaaggcgcucgga
(.(((.....))).).....((((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))))......(((((......))))).

Structure
---gguccucacuggagcugcuc        u    -     ga a              a  uua 
                       uuugguac ugaa gagag  u cccuuuguauguuc cu   u
                       |||||||| |||| |||||  | |||||||||||||| ||    
                       aaacuaug guuU UUCUC  A GGGGGACAUAUAag gg   u
aggcucgcggaagggccagucuc        c    A     AG -              c  uaa 


Annotation confidence Not enough data
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Genome context
chr8: 69273204-69273332 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from cfa-mir-1185
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-1185

Accession MIMAT0034383
Description Canis familiaris cfa-miR-1185 mature miRNA
Sequence 73 - AUAUACAGGGGGAGACUCUUAU - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545