Stem-loop cfa-mir-3958

Accession

MI0027985

Description

Canis familiaris cfa-mir-3958 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

gaggacgagcguggucacagaagcuggucugagauguucgaaaggagguuguccgugauguauuugcuuuguuuauggCAGAUAUUGCACGGUUGAUCUCUuuucaucaucaaaugccuucuugaaggacccgcggcacgu
........(((.((((....(((..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).)))..)))....))))))).......

Structure

gaggacga   u    acag   cu   c ga    uuc           gu     au         uug 
        gcg gguc    aag  ggu u  gaug   gaaaggagguu  ccgug  guauuugcu   u
        ||| ||||    |||  ||| |  ||||   |||||||||||  |||||  |||||||||    
        cgc ccag    uuc  ccg a  cuac   cuuuUCUCUAG  GGCAC  UAUAGACgg   u
-ugcacgg   -    gaag   uu   u aa    -ua           UU     GU         uau 

Annotation confidence Not enough data

Genome context

chr8: 69267134-69267274 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from cfa-mir-3958

Mature cfa-miR-3958

• Accession: MIMAT0034388
• Description: Canis familiaris cfa-miR-3958 mature miRNA
• Sequence: 79 - CAGAUAUUGCACGGUUGAUCUCU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545