miRBase entry: cfa-let-7d

Stem-loop cfa-let-7d

Accession

MI0027994

Description

Canis familiaris cfa-let-7d precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

aaauggguuccuaggaagagguaguagguugcauaguuuuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUUAGggccuuauuacuccacgguaaccugcucuu
....((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))))))..(((((....))))).........

Structure

---------------------aaau    u       a              c      -------uua      g 
                         gggu ccuagga gagguaguagguug auaguu          gggcag g
                         |||| ||||||| |||||||||||||| ||||||          |||||| a
                         uccg gGAUUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
uucucguccaauggcaccucauuau    -       -              A      uggaggaaca      u

Annotation confidence Not enough data

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Genome context

chr1: 97902012-97902136 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-let-7d

Accession	MIMAT0034396
Description	Canis familiaris cfa-let-7d mature miRNA
Sequence	71 - CUAUACGACCUGCUGCCUUUCUUAG - 95
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545