miRBase entry: cfa-mir-449b

Stem-loop cfa-mir-449b


Accession
MI0028007
Description
Canis familiaris cfa-mir-449b precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

gccaugaaacguagccgugaccugagucagguaggcaguguauuguuagcuggcugcuuugggucaaucuggCAGCCACCACUACCCUGCCACUugcuucuggacaaauucuucucauuaacaggcugc
..........((((((((((((.(((.(((((.(((((.(((.((...(.((((((((..((.....)).))))))))))).))).)))))))))).))).))...........)))).....))))))

Structure
gccaugaaac      -----    -----------  u   u     a     u   u  uua c        uu  g 
          guagcc     guga           cc gag caggu ggcag gua ug   g uggcugcu  gg u
          ||||||     ||||           || ||| ||||| ||||| ||| ||   | ||||||||  || c
          cgucgg     uacu           gg cuu guUCA CCGUC CAU AC   C ACCGACgg  cu a
----------      acaau    cuucuuaaaca  u   c     -     C   C  --- -        -u  a 


Annotation confidence Not enough data
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Genome context
chr2: 42542049-42542177 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-449b

Accession MIMAT0034406
Description Canis familiaris cfa-miR-449b mature miRNA
Sequence 73 - CAGCCACCACUACCCUGCCACU - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545