miRBase entry: eca-mir-8934-1

Stem-loop eca-mir-8934-1


Accession
MI0028072
Description
Equus caballus eca-mir-8934-1 precursor miRNA
Gene family
MIPF0002010; mir-8934


Sequence

24 reads, 4 reads per million, 1 experiments
ugguccccaugaaaacgggcagccaagguggcucggggggCCCCUGGAGGCCUCUGUACCCCACUugagaaaggguggcaguggggcagcaggcuuggggcccccagggcuccaccguuccugcuuugggaccugagaggugcac
.((((((.........((((((....((((((((.(((((((((...(((((((((..((((((((.(.......).).)))))))))).))))))))))))))).))))..))))....)))))).))))))............

Structure
-----------u      caugaaaac      ccaa    --    g         UGG      -   UA       - g ga 
            gguccc         gggcag    ggug  gcuc gggggCCCC   AGGCCU CUG  CCCCACU u a  a
            ||||||         ||||||    ||||  |||| |||||||||   |||||| |||  ||||||| | |  a
            ccaggg         uucguc    ccac  cggg cccccgggg   uucgga gac  gggguga g u  g
cacguggagagu      --------u      cuug    cu    a         ---      c   --       c g gg 


Annotation confidence Not enough data
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Genome context
NW_001867853.1: 194530-194674 [-]

Database links

Mature eca-miR-8934

Accession MIMAT0034463
Description Equus caballus eca-miR-8934 mature miRNA
Sequence 41 - CCCCUGGAGGCCUCUGUACCCCACU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545