miRBase entry: eca-mir-8939

Stem-loop eca-mir-8939


Accession
MI0028080
Description
Equus caballus eca-mir-8939 precursor miRNA


Sequence

500 reads, 30 reads per million, 1 experiments
gcggguacuaggcuguuuggucagggucggagaguuuucaccuauuuccacauccucccggaggaaaguccaucugccUUCCGAUGUAUAGUCAUGUGGGUaucucagacguccugagaugcugucuggauauccuuuguu
..(((((((((((.((....((((((((.((((...(((((((((....(((((.....(((((..((.....))..))))))))))))))....)))))..)))).)))..)))))...)).)))))).)))))......

Structure
----gc     -      u  uugg     --   g    guu     ----    uucc     cuccc     aa  u 
      gggua cuaggc gu    ucagg  guc gaga   uucac    cuau    acauc     ggagg  ag c
      ||||| |||||| ||    |||||  ||| ||||   |||||    ||||    |||||     |||||  || c
      ccuau ggucug cg    agucc  cag cucu   GGGUG    GAUA    UGUAG     CCUUc  uc a
uuguuu     a      u  -uag     ug   a    -aU     UACU    ----     -----     cg  u 


Annotation confidence Low
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Genome context
NW_001876352.1: 394291-394431 [-]

Database links

Mature eca-miR-8939

Accession MIMAT0034468
Description Equus caballus eca-miR-8939 mature miRNA
Sequence 79 - UUCCGAUGUAUAGUCAUGUGGGU - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545