miRBase entry: eca-mir-8933-2

Stem-loop eca-mir-8933-2


Accession
MI0028084
Description
Equus caballus eca-mir-8933-2 precursor miRNA
Gene family
MIPF0002005; mir-8933


Sequence

10 reads, 1 reads per million, 1 experiments
cugauauucacagguuguugacaacagcggggaguggggaGAGGUCAGGAACGCGGGCACAGGCGagugcuuucuccucuccucgguccuucccccguggacucuuguccugcagcuuccucucccuucuaguugauugccgugg
........(((.(((.((((((...((.((((((.(((((((((.(((((.((((((...(((((((..............))))..)))...))))))...))))).)))....)))))))))))).)).)))))).)))))).

Structure
cugauauu   a   u      aac  c      u      ----   U     --A      CAC   --    ugcuuu 
        cac ggu guugac   ag ggggag ggggaG    AGG CAGGA   CGCGGG   AGG  CGag      c
        ||| ||| ||||||   || |||||| ||||||    ||| |||||   ||||||   |||  ||||       
        gug ccg uaguug   uc ucccuc uccuuc    ucc guucu   gugccc   ucc  gcuc      u
-------g   -   u      --a  u      -      gacg   u     cag      ccu   ug    cucucc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_001870955.1: 20912-21056 [-]

Database links

Mature eca-miR-8933

Accession MIMAT0034462
Description Equus caballus eca-miR-8933 mature miRNA
Sequence 41 - GAGGUCAGGAACGCGGGCACAGGCG - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545