miRBase entry: eca-mir-8945

Stem-loop eca-mir-8945


Accession
MI0028091
Description
Equus caballus eca-mir-8945 precursor miRNA


Sequence

12 reads, 2 reads per million, 1 experiments
uguucagugcaggauuuuggucuuuugaaaCUCAAAGGAUACGGGCUCUUGAAcucaaaaaccuuuuuugcucaagacuguaguccuugccuugaguuucaaaggccuguuuugaaccuca
.((((((.(((((........(((((((((((((((((((((((..((((((...((((((...)))))).)))))))))).)))))....))))))))))))))))))).))))))....

Structure
---u      u     auuuuggu              ----     -    GC      Acu      c 
    guucag gcagg        cuuuugaaaCUCAA    AGGAU ACGG  UCUUGA   caaaaa  
    |||||| |||||        ||||||||||||||    ||||| ||||  ||||||   |||||| c
    caaguu ugucc        ggaaacuuugaguu    uccug uguc  agaacu   guuuuu  
acuc      u     --------              ccgu     a    --      --c      u 


Annotation confidence Not enough data
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Genome context
NW_001867699.1: 84685-84805 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-8945
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8945

Accession MIMAT0034474
Description Equus caballus eca-miR-8945 mature miRNA
Sequence 31 - CUCAAAGGAUACGGGCUCUUGAA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545