miRBase entry: eca-mir-8954

Stem-loop eca-mir-8954


Accession
MI0028101
Description
Equus caballus eca-mir-8954 precursor miRNA


Sequence

21 reads, 3 reads per million, 1 experiments
ucuuaaacaauugggucugaacaagagcguaucaagcguuUGGCGGUGUCUGGCGUAGAGCAGGagggcaguggagggcggcuguuuuacuccuggccccgacugagaagaggcuuugugaguuacgugguuuugcccaaaau
..........((((((..((((..((((.(((.((((.((((((((.(((.((.(((((((((....((........))..))))))))).)).))).))).))....))).)))).))).))).)...)))).))))))...

Structure
ucuuaaacaa      cu    -aa -   g   c    g   ----  -   U   U  C         Gagg  agu 
          uugggu  gaac   g agc uau aagc uuU    GG CGG GUC GG GUAGAGCAG    gc   g
          ||||||  ||||   | ||| ||| |||| |||    || ||| ||| || |||||||||    ||    
          aacccg  uuug   c uug gug uucg aga    uc gcc cgg cc cauuuuguc    cg   g
-------uaa      -u    gug a   a   u    g   agag  a   c   u  u         --gg  gga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 41938698-41938840 [-]

Database links

Mature eca-miR-8954

Accession MIMAT0034483
Description Equus caballus eca-miR-8954 mature miRNA
Sequence 41 - UGGCGGUGUCUGGCGUAGAGCAGG - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545