miRBase entry: eca-mir-8955

Stem-loop eca-mir-8955


Accession
MI0028103
Description
Equus caballus eca-mir-8955 precursor miRNA


Sequence

16 reads, 2 reads per million, 1 experiments
ucguaccucaucccaucaucuuuugaggcuggauucaaaggacuuggaaucauuccugcuuccaaagccaacuaugaggUUGAGGAGGGUCAAGAAUAUGUUCcaggacuucacccagacuggcaccguaaaugguggggagu
......(((..((((((((....((..(((((......(((.((((((((.((((.(((((((..((((........))))..)))))..)).))))..)))))))).)))........)))))..))...))))))))))).

Structure
ucguac   au        cuuu  ag     --auucaa   a        -c    c  --     aa    aac 
      cuc  cccaucau    ug  gcugg        agg cuuggaau  auuc ug  cuucc  agcc   u
      |||  ||||||||    ||  |||||        ||| ||||||||  |||| ||  |||||  ||||    
      gag  ggguggua    gc  cgguc        uuc ggacCUUG  UAAG AC  GGAGG  UUgg   a
-----u   --        -aau  ca     agacccac   a        UA    A  UG     AG    agu 


Annotation confidence Not enough data
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Genome context
chr24: 20344153-20344295 [+]

Database links

Mature eca-miR-8955

Accession MIMAT0034485
Description Equus caballus eca-miR-8955 mature miRNA
Sequence 80 - UUGAGGAGGGUCAAGAAUAUGUUC - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545