miRBase entry: eca-mir-3958

Stem-loop eca-mir-3958


Accession
MI0028104
Description
Equus caballus eca-mir-3958 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

761 reads, 115 reads per million, 1 experiments
ggcggagaaacagggucacagaagcuggucugagauguucgaaaggagguuguccgugauguauuugcuuuguuuguggCAGAUAUUGCACGGUUGAUCUCUUuucaucaucaaaugccuucucgaaggacuugcugcgcggu
.(((.((...((((.((...((.(..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).)))..)))....)))))))).)))...

Structure
--g   g  aaa    g  -aca  a cu   c ga    uuc           gu     au         uug 
   gcg ag   cagg uc    ga g  ggu u  gaug   gaaaggagguu  ccgug  guauuugcu   u
   ||| ||   |||| ||    || |  ||| |  ||||   |||||||||||  |||||  |||||||||    
   cgc uc   guuc ag    cu c  ccg a  cuac   cuuUUCUCUAG  GGCAC  UAUAGACgg   u
ugg   g  ---    -  gaag  - uu   u aa    -ua           UU     GU         ugu 


Annotation confidence Not enough data
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Genome context
chr24: 42908032-42908174 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from eca-mir-3958
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-3958

Accession MIMAT0034486
Description Equus caballus eca-miR-3958 mature miRNA
Sequence 80 - CAGAUAUUGCACGGUUGAUCUCUU - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545