miRBase entry: eca-mir-329b

Stem-loop eca-mir-329b


Accession
MI0028106
Description
Equus caballus eca-mir-329b precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

93 reads, 14 reads per million, 1 experiments
aaucagugguauucaugucgguguuaauugguaccugaagagagguuuucuaggucucuguuucuuuagugagggugaAACGAACCUGGUUAACCUCUUUUccaguaucagaucccaccuuggaggccuucugguccagau
.(((((.(((.((((....((((....(((((((..(((((((((((..((((((.((.(((((............)))))))))))))..)))))))))))..)))))))....)))).)))).)))..)))))......

Structure
-----a     -u   a    uguc    uuaa       cu           uu      c  u     uuuag 
      aucag  ggu uuca    ggug    uugguac  gaagagagguu  cuaggu uc guuuc     u
      |||||  ||| ||||    ||||    |||||||  |||||||||||  |||||| || |||||      
      ugguc  ccg aggu    ccac    gacuaug  cUUUUCUCCAA  GGUCCA AG CAAag     g
uagacc     uu   g    ---u    ccua       ac           UU      -  -     uggga 


Annotation confidence Not enough data
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Genome context
chr24: 42899649-42899789 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from eca-mir-329b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-329b

Accession MIMAT0034487
Description Equus caballus eca-miR-329b mature miRNA
Sequence 79 - AACGAACCUGGUUAACCUCUUUU - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545