miRBase entry: eca-mir-1388

Stem-loop eca-mir-1388


Accession
MI0028115
Description
Equus caballus eca-mir-1388 precursor miRNA
Gene family
MIPF0000805; mir-1388

Literature search
2 open access papers mention eca-mir-1388
(2 sentences)

Sequence

9196 reads, 1392 reads per million, 1 experiments
cuccaccggucgcccuugggcagugacuccAGGACUGUCCAACCUGAGAAUGGUgagucuccagggucguucucagguucgucagcccaugagaugcugccccuuccccagcaguggcugcca
.......(((.(((((.(((((((..(((..((.(((.(.(((((((((((((((......))...))))))))))))).).))).))..)))..)))))))..........)).))).))).

Structure
cuccacc   c   -  ---------u       ga   cA  A   U C             ---  ag 
       ggu gcc cu          gggcagu  cuc  GG CUG C AACCUGAGAAUGG   Ug  u
       ||| ||| ||          |||||||  |||  || ||| | |||||||||||||   ||   
       ccg cgg ga          cccgucg  gag  cc gac g uuggacucuugcu   ac  c
------a   u   u  cgaccccuuc       ua   ua  c   u c             ggg  cu 


Annotation confidence High
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Genome context
chr22: 49647210-49647332 [-]

Database links

Mature eca-miR-1388

Accession MIMAT0034496
Description Equus caballus eca-miR-1388 mature miRNA
Sequence 31 - AGGACUGUCCAACCUGAGAAUGGU - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545