Stem-loop eca-mir-8999

Accession

MI0028158

Description

Equus caballus eca-mir-8999 precursor miRNA

Sequence

2 reads, 0 reads per million, 1 experiments

gcacucgaauugccauuucucggucuucaaggccuccuccUGCCGCUGGCCCUGCAGUUCCUGAAccugaacagaggaggcggguaaagacugcaggguuggaagaaggggcagggacugaguacaaagugaaggggcggggcua
((.((((..((..(((((((((((((.....(((.(((.((.(((...(((((((((((((((..(((......)))...))))....)))))))))))))).)).))))))..))))))))....)))))..))..))))))..

Structure

--  a    aa  gc     ----        ucaag   u   c  G   CUG           ----    -AA   ga 
  gc cucg  uu  cauuu    cucggucu     gcc ccu cU CCG   GCCCUGCAGUU    CCUG   ccu  a
  || ||||  ||  |||||    ||||||||     ||| ||| || |||   |||||||||||    ||||   |||   
  cg gggc  gg  gugaa    gagucagg     cgg gga ga ggu   ugggacgucag    gggc   gga  c
au  -    gg  aa     acau        ---ga   -   a  a   ---           aaau    gga   ga 

Annotation confidence Not enough data

Genome context

chr7: 45595756-45595900 [-]

Mature eca-miR-8999

• Accession: MIMAT0034539
• Description: Equus caballus eca-miR-8999 mature miRNA
• Sequence: 41 - UGCCGCUGGCCCUGCAGUUCCUGAA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545