miRBase entry: eca-mir-9001

Stem-loop eca-mir-9001


Accession
MI0028161
Description
Equus caballus eca-mir-9001 precursor miRNA


Sequence

25 reads, 4 reads per million, 1 experiments
cccgagcgguaacccaggagcggaggcgaaGAGAUCUCGCAGGCGGCCGGCUGUGaggauugacagcuggcuuucuggaaaaucgcagccccggcuccuucgaccccucccccauuuccugagcc
...(((.(((.....((((((((.(((...((....((.((((.((((((((((........)))))))))).))))))...))...))))).))))))...))).)))................

Structure
-------------ccc   c   aaccc      -  a   gaa  GAUC  G    C          Gag 
                gag ggu     aggagc gg ggc   GA    UC CAGG GGCCGGCUGU   g
                ||| |||     |||||| || |||   ||    || |||| ||||||||||    
                cuc cca     uccucg cc ccg   cu    ag gucu ucggucgaca   a
ccgaguccuuuacccc   c   --gcu      g  -   acg  -aaa  -    u          guu 


Annotation confidence Not enough data
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Genome context
chr7: 78288029-78288153 [-]

Database links

Mature eca-miR-9001

Accession MIMAT0034541
Description Equus caballus eca-miR-9001 mature miRNA
Sequence 31 - GAGAUCUCGCAGGCGGCCGGCUGUG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545