miRBase entry: eca-mir-9005

Stem-loop eca-mir-9005


Accession
MI0028165
Description
Equus caballus eca-mir-9005 precursor miRNA


Sequence

17 reads, 3 reads per million, 1 experiments
ccugcccggcucucugagcacuucccuggagucugugcaaacaugagaacaggaacgaaagcagucucguucccgUGUUUGUGGGAUGAAGGCAGGAGCCcagaggcgagaagaggcuggggcagcaaaagcccc
(((.....((.(((((.((.(((.(((...((((..(((((((((......(((((((........)))))))))))))))).))))..))).))).)).)))))))......)))..(((((.......)))))

Structure
-------------------   -gcccg  u     a  a   c   gga    gu         agaaca       aag 
                   ccu      gc cucug gc cuu ccu   gucu  gcaaacaug      ggaacga   c
                   |||      || ||||| || ||| |||   ||||  |||||||||      |||||||    
                   gga      cg gagac CG GGA GGA   UAGG  UGUUUGUgc      ccuugcu   a
ccccgaaaacgacgggguc   gaagag  -     C  A   C   -AG    -G         ------       cug 


Annotation confidence Not enough data
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Genome context
chr8: 13095969-13096103 [+]

Database links

Mature eca-miR-9005

Accession MIMAT0034545
Description Equus caballus eca-miR-9005 mature miRNA
Sequence 76 - UGUUUGUGGGAUGAAGGCAGGAGCC - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545