miRBase entry: eca-mir-9009

Stem-loop eca-mir-9009


Accession
MI0028170
Description
Equus caballus eca-mir-9009 precursor miRNA


Sequence

3 reads, 0 reads per million, 1 experiments
gacaaucguguggccuuggcacugcuugauggugcccaggAGAAGACUGAGGCUCCCCGCccagggucuggagccgggccucaagcugugucuccauugcccgggcuccacagcagugggcugacuucagggcac
............((((((((((((((.(.(((.((((.(((((((..((((((((...((((((...)))).)).))))))))..))...))))).......)))).)))))))))))........)))))))..

Structure
gacaaucgugug       --------       u a   u    ------a     ---  AC        CCC  -    g 
            gccuugg        cacugcu g ugg gccc       ggAGA   AG  UGAGGCUC   GC ccag  
            |||||||        ||||||| | ||| ||||       |||||   ||  ||||||||   || |||| g
            cgggacu        gugacga c acc cggg       ccucu   uc  acuccggg   cg gguc  
----------ca       ucagucgg       - -   u    cccguua     gug  ga        --c  a    u 


Annotation confidence Not enough data
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Genome context
chr8: 29009099-29009233 [+]

Database links

Mature eca-miR-9009

Accession MIMAT0034549
Description Equus caballus eca-miR-9009 mature miRNA
Sequence 41 - AGAAGACUGAGGCUCCCCGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545