Stem-loop eca-mir-9010

Accession

MI0028171

Description

Equus caballus eca-mir-9010 precursor miRNA

Sequence

5 reads, 1 reads per million, 1 experiments

cucgggagcugggggacgggaugggacugccuuguuugucuugccguaggugcuguggcccuggcUUCAGCCGGUCUCUUAAACAGGAGUcuuuauagucagaccuccgguccuc
...((((.(((((((.(..(((((((((.(((.(((((....((((.....((((.(((....))).))))))))....))))))))))))))....))).).))))))))))).

Structure

cuc    g       a gg   ----      g   u     ucuu    uaggu    u   c 
   ggga cuggggg c  gau    gggacu ccu guuug    gccg     gcug ggc c
   |||| ||||||| |  |||    |||||| ||| |||||    ||||     |||| |||  
   uccu ggccucc g  cug    uucUGA GGA CAAAU    UGGC     CGAC Ucg u
--c    -       a -a   auau      -   -     UCUC    -----    U   g 

Annotation confidence Not enough data

Genome context

chr8: 12222172-12222286 [+]

Mature eca-miR-9010

• Accession: MIMAT0034550
• Description: Equus caballus eca-miR-9010 mature miRNA
• Sequence: 66 - UUCAGCCGGUCUCUUAAACAGGAGU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545