Stem-loop eca-mir-9022

Accession

MI0028186

Description

Equus caballus eca-mir-9022 precursor miRNA

Sequence

83 reads, 12 reads per million, 1 experiments

gauccuuacucaccggagaucuaucccagacuaggcguccccucugucugccccugcccccugccagaCAGCAGGGACGGUUUGGGUGUGAgaauaacauuuguuuugguuaaaguaauag
.....(((((.(((((((.(((..(((((((....((((((..(((((((.....((.....)))))))))..)))))))))))))....)))..........)))))))...)))))...

Structure

gaucc     --c       ---------a   --au       uagg      cu       ccccu  c 
     uuacu   accggag          ucu    cccagac    cguccc  cugucug     gc c
     |||||   |||||||          |||    |||||||    ||||||  |||||||     || c
     aauga   ugguuuu          agA    GGGUUUG    GCAGGG  GACagac     cg c
--gau     aau       guuuacaaua   GUGU       ----      AC       -----  u 

Annotation confidence Not enough data

Genome context

chr28: 45523585-45523705 [-]

Mature eca-miR-9022

• Accession: MIMAT0034564
• Description: Equus caballus eca-miR-9022 mature miRNA
• Sequence: 69 - CAGCAGGGACGGUUUGGGUGUGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545