miRBase entry: eca-mir-8935-3

Stem-loop eca-mir-8935-3


Accession
MI0028209
Description
Equus caballus eca-mir-8935-3 precursor miRNA
Gene family
MIPF0001901; mir-8935


Sequence

21 reads, 3 reads per million, 1 experiments
gucccaggcacgaggcggcgaacucccccaaaggcagagaUUUUGGCACCUGCGUCCUCGGCUGCuggguccggccccaagcaggcacgcggcccgcaggugccgggcgaaugucggcggaaagcacuaugcucacagggaagga
.((((.((((...((..((....(((.((...((((.....(((((((((((((.((.(((((((((((......))).)))).)).)).))..)))))))))))))....)))))).)))..)).)).))))....))))....

Structure
---g    ---a    cga  cg  gaac   c  aaa    gagaU             -U  U  -  -    -   uc 
    uccc    ggca   gg  gc    ucc cc   ggca     UUUGGCACCUGCG  CC CG GC UGCu ggg  c
    ||||    ||||   ||  ||    ||| ||   ||||     |||||||||||||  || || || |||| |||   
    aggg    ucgu   uc  cg    agg gg   cugu     gggccguggacgc  gg gc cg acga ccc  g
agga    acac    --a  -a  --aa   c  ---    -aagc             cc  c  a  g    a   cg 


Annotation confidence Not enough data
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Genome context
chr1: 69174803-69174947 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from eca-mir-8935-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8935

Accession MIMAT0034464
Description Equus caballus eca-miR-8935 mature miRNA
Sequence 41 - UUUUGGCACCUGCGUCCUCGGCUGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545