Stem-loop eca-mir-1307

Accession

MI0028213

Description

Equus caballus eca-mir-1307 precursor miRNA

Gene family

MIPF0000558; mir-1307

Literature search

1 open access papers mention eca-mir-1307
(1 sentences)

Sequence

586 reads, 88 reads per million, 1 experiments

ccagcugaguuacugccacugccuaccaaucucgaccggaccucgaccggcucgucuauguugccaaucgACUCGGCGUGGCGUCGGUCGUGGUAgauaggcggucauacauacgaauuuucaag
.(((........)))..((((((((.(.(((.(((((((.((.((.((((.(((..............))).)))))).))..))))))).))).).))))))))....................

Structure

---ccagcugaguuacugcc        c a   u       -a  u  a    c   ucuaug 
                    acugccua c auc cgaccgg  cc cg ccgg ucg      u
                    |||||||| | ||| |||||||  || || |||| |||       
                    uggcggau g UGG GCUGGCU  GG GC GGCU Agc      u
gaacuuuuaagcauacauac        a A   U       GC  U  -    C   uaaccg 

Annotation confidence Not enough data

Genome context

chr1: 26935090-26935214 [+]

Mature eca-miR-1307

• Accession: MIMAT0034589
• Description: Equus caballus eca-miR-1307 mature miRNA
• Sequence: 71 - ACUCGGCGUGGCGUCGGUCGUGGUA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545