miRBase entry: eca-mir-9050

Stem-loop eca-mir-9050


Accession
MI0028220
Description
Equus caballus eca-mir-9050 precursor miRNA


Sequence

8 reads, 1 reads per million, 1 experiments
gagggucgguuucaucuaggaggggaaggucagaaggagaAGCGACUGGCUUUGGAUAUGCUUCCaugggguucagguuuuccauggccaguuggggcucuuucccugcugagccugggccucauguucaaaggugcuucugagg
((((.(((((((.....((.(((((((((((...........(((((((((.((((...((((((....))...))))..)))).))))))))).))).)))))))).))))))).)).))))...(((((((...))).)))).

Structure
----------------------    g  -     caucu  g        -   agaaggagaAG         U    UAU    ---  a 
                      gagg uc gguuu     ag aggggaag guc           CGACUGGCU UGGA   GCUU   CC u
                      |||| || |||||     || |||||||| |||           ||||||||| ||||   ||||   ||  
                      cucc gg ccgag     uc ucccuuuc cgg           guugaccgg accu   ugga   gg g
ggagucuucguggaaacuugua    g  u     -----  g        u   ----------g         u    -uu    cuu  g 


Annotation confidence Not enough data
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Genome context
chr1: 99502868-99503012 [+]

Database links

Mature eca-miR-9050

Accession MIMAT0034594
Description Equus caballus eca-miR-9050 mature miRNA
Sequence 41 - AGCGACUGGCUUUGGAUAUGCUUCC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545