miRBase entry: eca-mir-9056

Stem-loop eca-mir-9056


Accession
MI0028227
Description
Equus caballus eca-mir-9056 precursor miRNA


Sequence

7 reads, 1 reads per million, 1 experiments
agcggcgccggccuaguccgcgcgagagcggcugcUGGGGCCGAGGCCCGGAGGACUGGCcuuggagcaucuucuggcccuucgcuggcuccucgagcucgggcuccucucugcagugggcguuggaagucugca
.(((((.(((((...((((((((.((((.((..(((.(((((((((.((((.(((..((((..((((...)))).)))).))).))))..))))).)))).))).)).)))))).)))))))))))..).)))).

Structure
a    - -g     cua      -  g    c  cu   G    -     -C    A   CU    uu    c 
 gcgg c  ccggc   guccgc gc agag gg  gcU GGGC CGAGG  CCGG GGA  GGCc  ggag  
 |||| |  |||||   |||||| || |||| ||  ||| |||| |||||  |||| |||  ||||  |||| a
 cguc g  gguug   cgggug cg ucuc cc  cgg cucg gcucc  gguc cuu  ccgg  cuuc  
a    u aa     ---      a  -    u  -u   g    a     uc    g   -c    -u    u 


Annotation confidence Not enough data
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Genome context
chr1: 91711374-91711508 [-]

Database links

Mature eca-miR-9056

Accession MIMAT0034600
Description Equus caballus eca-miR-9056 mature miRNA
Sequence 36 - UGGGGCCGAGGCCCGGAGGACUGGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545