miRBase entry: eca-mir-9080

Stem-loop eca-mir-9080


Accession
MI0028253
Description
Equus caballus eca-mir-9080 precursor miRNA
Gene family
MIPF0001982; mir-9080


Sequence

29 reads, 4 reads per million, 1 experiments
caagucccuuagucguauccgguagucugcauccaagauucaaccuaccauggaucauaaacauaguacuguacaugAUCCGAGGUUGGUUGAAUCUGUggauguggaacauguggauacagagggcuaacugucuauc
..((.(((((....(((((((....((((((((((((((((((((.(((.((((((((..(((......)))..)))))))).))).)))))))))).)))))))))).....))))))).)))))))...........

Structure
---------ca  u     aguc       -guag          -          u   a        aa   ua 
           ag cccuu    guauccg     ucugcaucca agauucaacc acc uggaucau  aca  g
           || |||||    |||||||     |||||||||| |||||||||| ||| ||||||||  |||   
           uc gggag    cauaggu     agguguaggU UCUAAGUUGG UGG GCCUAgua  ugu  u
cuaucugucaa  -     ---a       guaca          G          U   A        ca   ca 


Annotation confidence Not enough data
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Genome context
chr29: 10893677-10893815 [+]

Database links

Mature eca-miR-9080

Accession MIMAT0034625
Description Equus caballus eca-miR-9080 mature miRNA
Sequence 78 - AUCCGAGGUUGGUUGAAUCUGU - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545