miRBase entry: eca-mir-9089-1

Stem-loop eca-mir-9089-1


Accession
MI0028262
Description
Equus caballus eca-mir-9089-1 precursor miRNA
Gene family
MIPF0001991; mir-9089


Sequence

6 reads, 1 reads per million, 1 experiments
ucagcuuguuggcaggaguggaggaugaggauccaccuucugagcagggucuuucugugggugugUCACAGACAAGAACUCCCAGGGUGGguccuuccacccagauggcucagcc
...(((.(((..(.((.(((((.....((((((((((((.......((((((((((((((.....))))))).))))...)))))))))))))))))))))).)..)))..))).

Structure
uca   -u   gg a  a     ggaug            cugagca   ---    -       g 
   gcu  guu  c gg gugga     aggauccaccuu       ggg   ucuu ucugugg u
   |||  |||  | || |||||     ||||||||||||       |||   |||| ||||||| g
   cga  cgg  g cc caccu     uccugGGUGGGA       CCC   AGAA AGACACU u
--c   cu   ua a  -     -----            -------   UCA    C       g 


Annotation confidence Not enough data
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Genome context
chr10: 26190930-26191044 [+]

Database links

Mature eca-miR-9089

Accession MIMAT0034634
Description Equus caballus eca-miR-9089 mature miRNA
Sequence 66 - UCACAGACAAGAACUCCCAGGGUGG - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545