miRBase entry: eca-mir-9090

Stem-loop eca-mir-9090


Accession
MI0028263
Description
Equus caballus eca-mir-9090 precursor miRNA


Sequence

20 reads, 3 reads per million, 1 experiments
caggcagccccgagaguuggguugagaguggcucccugagcacugcggcuguggucagcucuaaggccuugucggcaggcUGAGAUUUCAGAGCCUGACAACCCUguggacuuaggauagcagagacccaccucuccccgcaucc
..((..((...(((((.((((((.......(((.((((((..((((((..((.(((((((((.(((.((((((....))).))).))).)))).))))).)).)))))).))))))..)))...)))))).)))))...))..))

Structure
ca  ca  ccc     u      gagagug   -c      ca      cu  g     -    a   c   -   g 
  gg  gc   gagag uggguu       gcu  ccugag  cugcgg  gu gucag cucu agg cuu guc g
  ||  ||   ||||| ||||||       |||  ||||||  ||||||  || ||||| |||| ||| ||| |||  
  cc  cg   cucuc acccag       cga  ggauuc  ggugUC  CA CAGUC GAGA UUU GAG cgg c
--  ua  ccc     c      ----aga   ua      -a      -C  A     C    C   A   U   a 


Annotation confidence Not enough data
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Genome context
chr10: 16382481-16382625 [-]

Database links

Mature eca-miR-9090

Accession MIMAT0034635
Description Equus caballus eca-miR-9090 mature miRNA
Sequence 81 - UGAGAUUUCAGAGCCUGACAACCCU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545