miRBase entry: eca-mir-9098

Stem-loop eca-mir-9098


Accession
MI0028275
Description
Equus caballus eca-mir-9098 precursor miRNA


Sequence

2 reads, 0 reads per million, 1 experiments
gaucauccagcaggguguggugucaugcacucucaUGACCUUGGUCGGGACGUAGUGAACcccagaggucaagaagugggguggcgcugagucuugccacaaagauccugagguggccaggcuccuggggguuuu
....((((..((((((.((((......(((.((((.((.(((((.((((((.(((((.((((((............))))))..))))).)))))))))...)).)).))))))))))).)).)))).))))...

Structure
gauc    ag    -  g    gucaug   u    U  C  ---   U      G     -A      gaggu 
    aucc  cagg gu uggu      cac cuca GA CU   UGG CGGGAC UAGUG  ACccca     c
    ||||  |||| || ||||      ||| |||| || ||   ||| |||||| |||||  ||||||      
    uggg  gucc cg accg      gug gagu cu ga   acc guucug gucgc  uggggu     a
-uuu    -g    u  g    ------   -    c  a  aac   -      a     gg      gaaga 


Annotation confidence Not enough data
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Genome context
chr11: 979994-980128 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-9098
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9098

Accession MIMAT0034645
Description Equus caballus eca-miR-9098 mature miRNA
Sequence 36 - UGACCUUGGUCGGGACGUAGUGAAC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545