miRBase entry: eca-mir-8934-2

Stem-loop eca-mir-8934-2


Accession
MI0028292
Description
Equus caballus eca-mir-8934-2 precursor miRNA
Gene family
MIPF0002010; mir-8934


Sequence

24 reads, 4 reads per million, 1 experiments
ugguccccaugaaaacgggcagccaagggggcucggggggCCCCUGGAGGCCUCUGUACCCCACUugagaaaggguggcaguggggcagcaggccuggggcccccagggcuccaccguuccugcuuggggaccugagaggugcac
.((((((((.(....((((.(((....(((((((.(((((((((...(((((((((..((((((((.(.......).).)))))))))).))))))))))))))).)))))))...)))))))).))))))))............

Structure
-----------u        u aaaa    c   caag       g         UGG      -   UA       - g ga 
            ggucccca g    cggg agc    ggggcuc gggggCCCC   AGGCCU CUG  CCCCACU u a  a
            |||||||| |    |||| |||    ||||||| |||||||||   |||||| |||  ||||||| | |  a
            ccaggggu c    gucc uug    ccucggg cccccgggg   uccgga gac  gggguga g u  g
cacguggagagu        u ----    -   -cca       a         ---      c   --       c g gg 


Annotation confidence Not enough data
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Genome context
chr12: 30929556-30929700 [+]

Database links

Mature eca-miR-8934

Accession MIMAT0034463
Description Equus caballus eca-miR-8934 mature miRNA
Sequence 41 - CCCCUGGAGGCCUCUGUACCCCACU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545