miRBase entry: eca-mir-9113

Stem-loop eca-mir-9113


Accession
MI0028293
Description
Equus caballus eca-mir-9113 precursor miRNA


Sequence

3 reads, 0 reads per million, 1 experiments
aaggaaccccgaggagaggcgagguggggaAGGAUUCUCAGGACUCGCUCUGgcucuagcuugcugggugaucuugggcagcgucuuuccuuucucuggccgucauuucuucacgggaa
.......((((.((((((((.(((.((((((((((.(((((((.((((.(((((........))))))))))))))))....)))))))))).).)).)))......))))).))))..

Structure
aaggaac    a     ------   g  - u          ---U       C    U     ucu 
       cccg ggaga      ggc ag g ggggaAGGAU    CUCAGGA UCGC CUGgc   a
       |||| |||||      ||| || | ||||||||||    ||||||| |||| |||||    
       gggc cuucu      ccg uc c uuccuuucug    ggguucu agug ggucg   g
-----aa    a     uuacug   g  u u          cgac       -    -     uuc 


Annotation confidence Not enough data
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Genome context
chr12: 20723744-20723862 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-9113
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-9113

Accession MIMAT0034662
Description Equus caballus eca-miR-9113 mature miRNA
Sequence 31 - AGGAUUCUCAGGACUCGCUCUG - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545