miRBase entry: eca-mir-9128-1

Stem-loop eca-mir-9128-1


Accession
MI0028310
Description
Equus caballus eca-mir-9128-1 precursor miRNA
Gene family
MIPF0002044; mir-9128


Sequence

33 reads, 2 reads per million, 1 experiments
ggcacuugccgaggagcgggagccgggugggugcuggcccugcuuccguggguuucagcucucguuggugCUGGUGCUCGCGUGGGCCACGUCACccucccuucacccuuguaucgugcagguga
..((((((((((.....(((.(..(((.((((((((((((......(((((((.(((((.((....)).))))).))))))).)))))).).))))).)))..).))).....))).))))))).

Structure
gg       -   ggagc   a cc   u     - -      ugcuuc       u     u  c 
  cacuugc cga     ggg g  ggg gggug c uggccc      cgugggu ucagc cu g
  ||||||| |||     ||| |  ||| ||||| | ||||||      ||||||| ||||| ||  
  guggacg gcu     ccc c  ccc ccCAC G ACCGGG      GCGCUCG GGUCg gg u
-a       u   auguu   a uu   u     U C      -----U       U     u  u 


Annotation confidence Not enough data
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Genome context
chr13: 26883703-26883827 [+]

Database links

Mature eca-miR-9128

Accession MIMAT0034679
Description Equus caballus eca-miR-9128 mature miRNA
Sequence 71 - CUGGUGCUCGCGUGGGCCACGUCAC - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545