miRBase entry: eca-mir-8908f-2

Stem-loop eca-mir-8908f-2


Accession
MI0028334
Description
Equus caballus eca-mir-8908f-2 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

35 reads, 5 reads per million, 1 experiments
ggcaggaucuaccacuuuagccgugcugugugcaguguccUACUCAGAAAGGUACUGAUCACUuagaggacaaguagucacugccuuucuggguagaaugaugcucaacaagaacaacauugaugguggccuguagcagug
.(((((..((((((........((.((.(((..(((((((((((((((((((((.((((.((((.......)))).)))).)))))))))))))))...))))))..))))).))........))))))))))).......

Structure
------g     au      cuuuagcc  g  g   gc      ---               C    C    ag 
       gcagg  cuacca        gu cu ugu  aguguc   cUACUCAGAAAGGUA UGAU ACUu  a
       |||||  ||||||        || || |||  ||||||   ||||||||||||||| |||| ||||  g
       ugucc  gguggu        ca ga aca  ucguag   gaugggucuuuccgu acug ugaa  g
gugacga     --      aguuacaa  a  -   ac      uaa               c    a    ca 


Annotation confidence Not enough data
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Genome context
chrX: 115859723-115859863 [-]
Clustered miRNAs
18 other miRNAs are < 10 kb from eca-mir-8908f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908f

Accession MIMAT0034701
Description Equus caballus eca-miR-8908f mature miRNA
Sequence 41 - UACUCAGAAAGGUACUGAUCACU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545