miRBase entry: eca-mir-8908k-2

Stem-loop eca-mir-8908k-2


Accession
MI0028344
Description
Equus caballus eca-mir-8908k-2 precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

1125 reads, 170 reads per million, 1 experiments
cagugugcagugcccUACCCAGAAUGGUGCCGAAUACUUAguguacauguauucggcaccuucuggguagcguaaugcucaacacgaacgacguu
..(((((((.(((.((((((((((.((((((((((((...........)))))))))))))))))))))).))).)))...))))..........

Structure
--------ca    ---   g   c          U            UUAg 
          gugu   gca ugc cUACCCAGAA GGUGCCGAAUAC    u
          ||||   ||| ||| |||||||||| ||||||||||||    g
          caca   cgu aug gaugggucuu ccacggcuuaug    u
uugcagcaag    acu   a   c          -            uaca 


Annotation confidence High
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Genome context
chrX: 115858390-115858484 [-]
Clustered miRNAs
17 other miRNAs are < 10 kb from eca-mir-8908k-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908k

Accession MIMAT0034694
Description Equus caballus eca-miR-8908k mature miRNA
Sequence 16 - UACCCAGAAUGGUGCCGAAUACUUA - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545