miRBase entry: eca-mir-8908h

Stem-loop eca-mir-8908h


Accession
MI0028348
Description
Equus caballus eca-mir-8908h precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

398 reads, 60 reads per million, 1 experiments
ggcagauucuccacuuugauccauucugugugcagugcccUAUCCAGUAAGGUACUGAUCACUUAgacuauaugggaucagugccugucuggguggaguaaugcuugacaggaacaacauuugggagggucuucagacuggugcu
((.(((((((((....((.....((((((..(((.(((.((((((((..(((((((((((.((..........)))))))))))))..)))))))).))).)))...))))))....))....)))))))))))...........

Structure
-----------  c         acuu  aucca      -gu   g   c        UA           A  UAga 
           gg agauucucc    ug     uucugu   gca ugc cUAUCCAG  AGGUACUGAUC CU    c
           || |||||||||    ||     ||||||   ||| ||| ||||||||  ||||||||||| ||     
           cu ucugggagg    ac     aggaca   cgu aug gguggguc  uccgugacuag gg    u
ucguggucaga  -         guuu  -aaca      guu   a   a        ug           -  uaua 


Annotation confidence Not enough data
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Genome context
chrX: 115879532-115879676 [-]
Clustered miRNAs
9 other miRNAs are < 10 kb from eca-mir-8908h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-8908h

Accession MIMAT0034710
Description Equus caballus eca-miR-8908h mature miRNA
Sequence 41 - UAUCCAGUAAGGUACUGAUCACUUA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545